BioFolD - Emidio Capriotti

Biomolecules Folding and Disease

Proteomes, Interactomes and Biological Networks

Proteomes, Interactomes and Biological Networks (85306) is 62-hour course of the 3^rd year of the Degree in Genomics taught by Emidio Capriotti. The course is running from November 5th to December 11, 2019 in rooms and labs located in via della Beverara 123. This page will include all the slides and materials of the lectures.

Materials

Course Schedule and General Information
Protein Sequence and Structure.	5, 7 and 8 November, 2019.
Amino Acid Properties.	11 November, 2019.
Analysis and Prediction of Protein Complexes.	12 November, 2019.
Protein Interactions.	18 November, 2019.
Introduction to Graph Theory.	19 and 20 November, 2019.
Motifs, Modules and Pathways.	26, 27 and 29 November, 2019.
Introduction to the Project	2, 3 and 4 December, 2019.
Project Report	5 and 11 December, 2019.

Requirements

This is a theoretical and hands-on module which requires the use of PC. Students are encouraged to use their own laptop. Practical session of the course will be performed on a Linux OS.

References

Dill and Chan. (1997) From Levinthal to pathways to funnels. Nature Structural Biology, 4:10–19.

Reichmann et al. (2007). The molecular architecture of protein–protein binding sites. Current Opinion in Structural Biology, 17:67–76

Shoemaker BA, Panchenko AR (2007). Deciphering protein-protein interactions. Part I. Experimental techniques and databases. PLoS Comput Biol. 3:e42.

Shoemaker BA, Panchenko AR (2007). Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. PLoS Comput Biol. 3:e43

Alon U. (2007). Network motifs: theory and experimental approaches. Nat Rev Genet. 8:450-461

Evaluation

In this page we included the evaluation form anonymously compiled by the participants to evaluate the quality of our course. Answers submitted with numbers from 1 (No) to 4 (Yes) have been included in the following statistics calculated by R. The evaluation form was compiled by 24 participants which rated the course with an average score of 3.2 over 4.

Data